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PLINK File Extensions

On this page, you can find the list of file extensions associated with the PLINK application.

There are currently 48 filename extension(s) associated with the PLINK application in our database.

PLINK is capable of opening the file types listed below. Conversion between the file types listed below is also possible with the help of PLINK. You can find more information about it in the application's manual.

Associated file types

.hom PLINK Homozygosity Data
.frqx PLINK Genotype Count Report
.gvar PLINK Genetic Variant File
.tfam PLINK Individual Information File
.rel PLINK Text Relationship Matrix
.fst PLINK Fixation Index Report
.bim PLINK Extended MAP File
.hwe PLINK Hardy-Weinberg Exact Test Statistic Report
.imiss PLINK Individual-based Missing Data Report
.fam PLINK Individual Information File
.clst PLINK Cluster Membership File
.rlist PLINK Rare Genotype List File
.tdt PLINK Transmission Disequilibrium Test Report
.ped PLINK Pedigree and Genotype Table
.grm PLINK GCTA Text Relationship Matrix
.pphe PLINK Phenotype Permutations Data
.tped PLINK Transposed Text Genotype Table
.cmh PLINK Cochran Mantel Haenszel 2x2xK Test Report
.bed PLINK Binary Biallelic Genotype Table
.cnv PLINK Segmental Copy Number Variant Data
.lgen PLINK Long-format Genotype File
.list PLINK Genotype List File
.dist PLINK Genomic Hamming Distance Matrix
.frq PLINK Basic Allele Frequency Report
.traw PLINK Variant-major Additive Component File
.set PLINK END-terminated Variant Set Membership List
.ref PLINK Long-format Reference Allele File
.perm PLINK Adaptive Permutation Test Report
.prob PLINK Meta-analysis Rejected Variant List
.cmh2 PLINK Cochran Mantel Haenszel IxJxK Test Report
.adjusted PLINK Basic Multiple-testing Corrections Data
.gen PLINK Oxford Genotype Data
.epi PLINK Epistatic Interaction Scan Reports Data
.het PLINK Method-of-moments F Coefficient Estimates Data
.hh PLINK Heterozygous Haploid Data
.homog PLINK Homogeneity Test Report Data
.ibc PLINK GCTA Inbreeding Coefficient Report Data
.lasso PLINK LASSO Data
.mdist PLINK Genomic Distance Proportion Matrix Data
.mds PLINK Multidimensional Scaling Report Data
.meta PLINK Meta-analysis Data
.mibs PLINK Identity-by-state Matrix Data
.mperm PLINK Max Permutation Test Report Data
.nearest PLINK Nearest Neighbor Distance Report Data
.qassoc PLINK Quantitative Trait Association Test Report Data
.qfam PLINK Quantitative Trait Association Report Data
.raw PLINK Additive and Dominant Component Data
.simfreq PLINK Simulation Parameter Data

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System requirements

You can find the system requirements for the PLINK application on the application's website and the application's manual. If you're not sure that your system meets these requirements, then consult the help of a professional!

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Supported operating systems

Windows Server 2003/2008/2012/2016, Windows 7, Windows 8, Windows 10, Linux, FreeBSD, NetBSD, OpenBSD, Mac OS X, iOS, Android